BioMCP Research Server MCP Server

About

## BioMCP Research Server: Biomedical Data Access The **BioMCP Research Server** integrates biomedical research databases into Google Antigravity, enabling AI-assisted access to genomic data, protein structures, and scientific literature for life sciences research. ### Why BioMCP? - **Genomic Data**: Access gene sequences, variants, and annotations from major databases - **Protein Structures**: Query protein structure databases including PDB - **Literature Search**: Search PubMed and biomedical literature efficiently - **Pathway Analysis**: Access biological pathway and interaction data - **Clinical Data**: Query clinical trial and drug information databases ### Key Features #### 1. Gene Queries ```python from anthropic import Anthropic client = Anthropic() response = client.messages.create( model="claude-sonnet-4-20250514", max_tokens=1024, messages=[{ "role": "user", "content": "Get gene information and known variants for BRCA1" }] ) ``` #### 2. Protein Structures ```python # Query proteins response = client.messages.create( model="claude-sonnet-4-20250514", max_tokens=1024, messages=[{ "role": "user", "content": "Find protein structures for insulin receptor and binding sites" }] ) ``` #### 3. Literature Search ```python # Search literature response = client.messages.create( model="claude-sonnet-4-20250514", max_tokens=1024, messages=[{ "role": "user", "content": "Find recent papers on CRISPR gene editing applications" }] ) ``` #### 4. Pathway Analysis ```python # Analyze pathways response = client.messages.create( model="claude-sonnet-4-20250514", max_tokens=1024, messages=[{ "role": "user", "content": "Show metabolic pathways involving glucose regulation" }] ) ``` ### Configuration ```json { "mcpServers": { "biomcp": { "command": "npx", "args": ["-y", "@anthropic/mcp-server-biomcp"], "env": { "NCBI_API_KEY": "your-ncbi-api-key" } } } } ``` ### Use Cases **Genomics Research**: Access and analyze genomic data for research. **Drug Discovery**: Query drug targets and protein interactions. **Literature Review**: Efficiently search biomedical literature. **Bioinformatics**: Access data for computational biology workflows. The BioMCP Research Server brings comprehensive biomedical data access into your workflow.

Installation

{
  "mcpServers": {
    "biomcp": {
      "mcpServers": {
        "biomcp": {
          "args": [
            "biomcp"
          ],
          "command": "uvx"
        }
      }
    }
  }
}

How to Use

1. 1PubMed search
2. 2ClinicalTrials.gov
3. 3Medical literature